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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_80763167_80763815_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80763167 - 80763815
Intron Length:
649

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGCAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTATATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
TAGACTTGAACA
Flanking Amino Acid:
VTAFSPIDYEAVVGTLEFQP
Intron Amino Acid Position:
1825

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
67.5
39.2
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
83.3
0.75
0.8
77.7
35
Minor 5ss
36.2
-1.6
3.2
46.5
48.8
Minor BPS
59.7
0.3
1.5
66.38
39.7

Associated Gene:

Gene:
ADGRV1
Ensembl Gene ID:
ENSAPLG00000008200
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023434
80738928 - 80801547
62620
ENSAPLT00000008578
80535623 - 80807079
271457