Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_80778153_80778531_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

80778153 - 80778531

Intron Length:

379

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTAGATAT

5'SS Class:

strong_major

3'SS Sequence:

TTTGTATTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTGTAT

U12 Branch Point Sequence:

GCTTTTGTATTT

Flanking Amino Acid:

TKNDDPIYFAEPVTVSVQEG

Intron Amino Acid Position:

1065

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.8

0.73

1.1

78.9

30.7

Major BPS

71.5

0.53

1.4

71.7

44.6

Major PPT

87.8

0.85

0.8

85.4

34.1

Minor 5ss

-1.6

47.9

47.7

Minor BPS

45.2

-0.2

2.1

63.03

42.4

Associated Gene:

Gene:

ADGRV1

Ensembl Gene ID:

ENSAPLG00000008200

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023434

80738928 - 80801547

62620

ENSAPLT00000008578

80535623 - 80807079

271457