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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_80782265_80782351_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80782265 - 80782351
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTATC
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGAATTTTATTT
Flanking Amino Acid:
SSSRGPYSIKEGESVELQIV
Intron Amino Acid Position:
851

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1.1
85.3
32.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
92.2
0.95
0.7
88.5
28.4
Minor 5ss
45.8
-0.4
2.6
63
41.5
Minor BPS
50.1
0.08
1.6
65.6
39.4

Associated Gene:

Gene:
ADGRV1
Ensembl Gene ID:
ENSAPLG00000008200
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023434
80738928 - 80801547
62620
ENSAPLT00000008578
80535623 - 80807079
271457
ENSAPLT00000033971
80781199 - 80810901
29703