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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_80802709_80803805_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80802709 - 80803805
Intron Length:
1097

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTCTA
5'SS Class:
major
3'SS Sequence:
TTGTTAATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
GTTTTGTTAATT
Flanking Amino Acid:
ETFTFYLTLPKPSAKMKLGS
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
72.1
39.4
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
77.5
0.62
0.9
75.5
38.4
Minor 5ss
40
-1.1
3
55.9
42.3
Minor BPS
65.1
0.55
2
83.97
37.3

Associated Gene:

Gene:
ADGRV1
Ensembl Gene ID:
ENSAPLG00000008200
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033971
80781199 - 80810901
29703
ENSAPLT00000008578
80535623 - 80807079
271457