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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_80803956_80806686_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80803956 - 80806686
Intron Length:
2731

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
GTATTTATTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TGTCACTCACTT
Flanking Amino Acid:
KPANVTAIVSLYGEDTGDFF
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
75.5
34.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
75.9
0.58
0.9
70.9
39.5
Minor 5ss
34.3
-1.8
3
44.8
42.9
Minor BPS
46.8
-0.1
2
67.82
42.7

Associated Gene:

Gene:
ADGRV1
Ensembl Gene ID:
ENSAPLG00000008200
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033971
80781199 - 80810901
29703
ENSAPLT00000008578
80535623 - 80807079
271457