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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_80841319_80841800_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80841319 - 80841800
Intron Length:
482

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGCTTTTT
5'SS Class:
major
3'SS Sequence:
TGTTTTTATTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GTGTTTTTATTT
Flanking Amino Acid:
EEYDEEEHEEENDYISSYFE
Intron Amino Acid Position:
189

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
76.9
34.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82
0.72
0.8
82
34.8
Minor 5ss
39.7
-1.2
3.2
58.4
46.1
Minor BPS
57.8
0.32
1.6
71.48
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008192
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008503
80841232 - 80854317
13086