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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_80842479_80845879_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
80842479 - 80845879
Intron Length:
3401

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGATTAT
5'SS Class:
major
3'SS Sequence:
TATTTTATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATATTTTATTT
Flanking Amino Acid:
EMKPRKKMKKASAKPRKANS
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
77.3
33.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
87.9
0.85
0.8
86
32.7
Minor 5ss
39.8
-1.1
3.3
57.3
47.4
Minor BPS
56.7
0.29
1.6
73.05
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008192
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008503
80841232 - 80854317
13086