Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_80846707_80851956_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

80846707 - 80851956

Intron Length:

5250

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTTTGTTTA

5'SS Class:

major

3'SS Sequence:

TCTTTCTCTACAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTTTAATTAATT

Flanking Amino Acid:

YFLAVEEEREAIERYSKKYQ

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.8

0.66

1.1

77.9

32.4

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

89.2

0.88

0.6

84.1

24.1

Minor 5ss

46.2

-0.4

2.4

58.8

45.7

Minor BPS

70.8

0.73

1.7

90.5

32.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008192

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008503

80841232 - 80854317

13086