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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_80877516_80884617_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
80877516 - 80884617
Intron Length:
7102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTAAT
U12 Branch Point Sequence:
GTTTGTCTAATA
Flanking Amino Acid:
EEFDKDGDGEINQEEFIAIM
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
84.6
33.2
Major BPS
76.7
0.66
1.2
77.9
34.9
Major PPT
91.7
0.94
0.5
88.6
21.1
Minor 5ss
41.1
-1
2.8
51.8
38.9
Minor BPS
50.7
0.02
2
68.43
38.4

Associated Gene:

Gene:
CETN3
Ensembl Gene ID:
ENSAPLG00000008041
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042786
80869441 - 80885054
15614
ENSAPLT00000032577
80860373 - 80885054
24682
ENSAPLT00000008341
80872610 - 80885054
12445