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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_81065218_81096594_F

Intron Information:

Intron Rank:
149488
Intron Class:
major
Intron Phase:
Intron Coordinates:
81065218 - 81096594
Intron Length:
31377

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTAACGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAACG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
83.9
34.2
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
74.7
0.56
1
70.9
38.9
Minor 5ss
48.2
-0.2
2.5
69.3
41.2
Minor BPS
82
0.87
1.1
82.56
32

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030446
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031305
81061764 - 81096859
35096