Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_81245349_81246562_F

Intron Information:

Intron Rank:

143837

Intron Class:

major

Intron Phase:

Intron Coordinates:

81245349 - 81246562

Intron Length:

1214

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAACGTA

5'SS Class:

strong_major

3'SS Sequence:

CCCATATCGACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTTAT

U12 Branch Point Sequence:

TTTTTGTTATTG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.3

0.74

74.8

35.6

Major BPS

81.3

0.78

1.1

71.7

44.6

Major PPT

62.4

0.28

56.8

37.7

Minor 5ss

39.3

-1.2

3.5

55.3

48.9

Minor BPS

49.8

-0.1

2.3

66.23

42.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027515

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028549

81244669 - 81247089

2421

ENSAPLT00000048163

81244669 - 81247089

2421