About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_81355720_81389786_F

Intron Information:

Intron Rank:
145422
Intron Class:
major
Intron Phase:
Intron Coordinates:
81355720 - 81389786
Intron Length:
34067

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
CTCTGATCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TTGTTTTCCACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
74
36.6
Major BPS
79
0.72
1
69
38.9
Major PPT
76.3
0.59
0.9
69.5
35.8
Minor 5ss
31
-2.2
3.2
37
41.8
Minor BPS
49.2
-0
1.9
65.45
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028396
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037174
81350001 - 81403299
53299