About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_81390463_81392737_F

Intron Information:

Intron Rank:
145423
Intron Class:
major
Intron Phase:
Intron Coordinates:
81390463 - 81392737
Intron Length:
2275

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
AATGTCTGAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
80
29.3
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
83.7
0.76
0.8
79.2
32.9
Minor 5ss
26.1
-2.7
2.9
29.9
43.2
Minor BPS
62.3
0.46
1.5
76.27
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028396
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037174
81350001 - 81403299
53299