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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_81438073_81502358_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
81438073 - 81502358
Intron Length:
64286

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAC
U12 Branch Point Sequence:
GGATTATTGACA
Flanking Amino Acid:
MILTIKRVYVVTFTKRKFGL
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.85
0.8
83.1
28.6
Major BPS
78.7
0.71
0.9
69.3
37.7
Major PPT
91
0.92
0.6
85.6
29.2
Minor 5ss
33.3
-1.9
3.4
45.9
43.7
Minor BPS
53.3
0.1
1.6
61.69
37.6

Associated Gene:

Gene:
MEF2C
Ensembl Gene ID:
ENSAPLG00000011196
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034414
81434509 - 81564495
129987