Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_81448161_81489783_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

81448161 - 81489783

Intron Length:

41623

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGGGTTTT

5'SS Class:

strong_major

3'SS Sequence:

TTTCTGTGTTTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTGAT

U12 Branch Point Sequence:

TAATATTTGATT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.82

0.9

83.9

30.3

Major BPS

87.6

0.93

0.8

77.4

37.3

Major PPT

77.7

0.62

0.9

77.1

37.1

Minor 5ss

39.3

-1.2

3.3

57.3

47.4

Minor BPS

59.7

0.39

1.5

73.35

37.5

Associated Gene:

Gene:

MEF2C

Ensembl Gene ID:

ENSAPLG00000011196

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028933

81448027 - 81563772

115746