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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_81489982_81502358_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
81489982 - 81502358
Intron Length:
12377

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAC
U12 Branch Point Sequence:
GGATTATTGACA
Flanking Amino Acid:
TRIMDERNRQVTFTKRKFGL
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
78
38.6
Major BPS
78.7
0.71
0.9
69.3
37.7
Major PPT
91
0.92
0.6
85.6
29.2
Minor 5ss
38.7
-1.3
2.8
49.1
46.7
Minor BPS
53.3
0.1
1.6
61.69
37.6

Associated Gene:

Gene:
MEF2C
Ensembl Gene ID:
ENSAPLG00000011196
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028933
81448027 - 81563772
115746
ENSAPLT00000025638
81489784 - 81564406
74623
ENSAPLT00000022141
81434509 - 81564406
129898
ENSAPLT00000011671
81458897 - 81563753
104857
ENSAPLT00000031189
81434509 - 81564495
129987