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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_81538844_81553163_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
81538844 - 81553163
Intron Length:
14320

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGAGA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TCTTTCTTAACA
Flanking Amino Acid:
DLTTGAGTSAGNGYGNPRNS
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
72
39.3
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
84.1
0.77
0.8
80.8
29.7
Minor 5ss
31
-2.2
3.2
40
45.7
Minor BPS
85.3
1.1
1
86.69
32.1

Associated Gene:

Gene:
MEF2C
Ensembl Gene ID:
ENSAPLG00000011196
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025638
81489784 - 81564406
74623
ENSAPLT00000022141
81434509 - 81564406
129898
ENSAPLT00000034414
81434509 - 81564495
129987
ENSAPLT00000011671
81458897 - 81563753
104857
ENSAPLT00000031189
81434509 - 81564495
129987
ENSAPLT00000028933
81448027 - 81563772
115746