Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_81553337_81555558_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

81553337 - 81555558

Intron Length:

2222

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTAATGCAT

5'SS Class:

major

3'SS Sequence:

CTTACTTTAAAAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTTAT

U12 Branch Point Sequence:

TTTTACTTACTT

Flanking Amino Acid:

PGSKNTMPSVNQRINNSQSA

Intron Amino Acid Position:

271

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.6

0.51

1.1

64.2

41.4

Major BPS

81.3

0.78

1.1

71.7

44.6

Major PPT

65.8

0.36

1.1

67.6

36.7

Minor 5ss

32.6

-2

3.4

44.4

44.5

Minor BPS

69.3

0.68

1.8

88.84

36.2

Associated Gene:

Gene:

MEF2C

Ensembl Gene ID:

ENSAPLG00000011196

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034414

81434509 - 81564495

129987

ENSAPLT00000031189

81434509 - 81564495

129987

ENSAPLT00000022141

81434509 - 81564406

129898

ENSAPLT00000011671

81458897 - 81563753

104857