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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_81556709_81563431_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
81556709 - 81563431
Intron Length:
6723

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTAAC
U12 Branch Point Sequence:
CCGTCTGTAACT
Flanking Amino Acid:
NMPPSALSQLGACTSTHLSQ
Intron Amino Acid Position:
357

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
72.7
44.5
Major BPS
62.2
0.3
1.2
65
38.7
Major PPT
86.4
0.82
0.7
80.7
24.7
Minor 5ss
40.7
-1
2.9
49.5
46.5
Minor BPS
54.9
0.23
2.1
70.68
46.8

Associated Gene:

Gene:
MEF2C
Ensembl Gene ID:
ENSAPLG00000011196
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034414
81434509 - 81564495
129987
ENSAPLT00000031189
81434509 - 81564495
129987
ENSAPLT00000022141
81434509 - 81564406
129898