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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_81746476_81751050_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
81746476 - 81751050
Intron Length:
4575

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTGTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTGTATTTATCT
Flanking Amino Acid:
GKQRGKSKKDRKYNGHIENK
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
93.3
21.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
80.7
0.69
0.9
73.6
41.7
Minor 5ss
41
-1
3
59.7
44.8
Minor BPS
61.6
0.44
1.8
80.6
41.4

Associated Gene:

Gene:
TMEM161B
Ensembl Gene ID:
ENSAPLG00000010679
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038251
81742628 - 81785329
42702
ENSAPLT00000018860
81742628 - 81789917
47290
ENSAPLT00000048045
81742628 - 81791111
48484
ENSAPLT00000011149
81742628 - 81772667
30040
ENSAPLT00000047617
81742628 - 81769811
27184
ENSAPLT00000042044
81742628 - 81778434
35807