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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_81759733_81761409_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
81759733 - 81761409
Intron Length:
1677

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTTCT
5'SS Class:
major
3'SS Sequence:
TCTTTTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
AAATGCTTATTT
Flanking Amino Acid:
QFLEKQGLESQGPVSKLTFK
Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
75.5
35
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
89.3
0.88
0.6
88.9
20.3
Minor 5ss
45
-0.5
2.8
65.4
39.4
Minor BPS
50.4
0.09
2
68.45
42.5

Associated Gene:

Gene:
TMEM161B
Ensembl Gene ID:
ENSAPLG00000010679
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018860
81742628 - 81789917
47290
ENSAPLT00000048045
81742628 - 81791111
48484
ENSAPLT00000011149
81742628 - 81772667
30040
ENSAPLT00000047617
81742628 - 81769811
27184
ENSAPLT00000042044
81742628 - 81778434
35807
ENSAPLT00000038251
81742628 - 81785329
42702