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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_81761551_81764898_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
81761551 - 81764898
Intron Length:
3348

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGAGAA
5'SS Class:
major
3'SS Sequence:
TTTCTTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTCTTATTT
Flanking Amino Acid:
ALNLATEKITQTLLHINFLA
Intron Amino Acid Position:
255

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1
65.4
34.3
Major BPS
100
1.24
0.5
100
0
Major PPT
90.7
0.92
0.7
89.4
25.6
Minor 5ss
31.9
-2.1
3.4
43.8
44.6
Minor BPS
75.8
0.89
1.5
91.23
32.5

Associated Gene:

Gene:
TMEM161B
Ensembl Gene ID:
ENSAPLG00000010679
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038251
81742628 - 81785329
42702
ENSAPLT00000018860
81742628 - 81789917
47290
ENSAPLT00000048045
81742628 - 81791111
48484
ENSAPLT00000011149
81742628 - 81772667
30040
ENSAPLT00000047617
81742628 - 81769811
27184
ENSAPLT00000042044
81742628 - 81778434
35807