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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_81769154_81769261_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
81769154 - 81769261
Intron Length:
108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGGGTTGC
5'SS Class:
major
3'SS Sequence:
CGTCAAATTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
ACAACGTCAAAT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
61.9
39.6
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
62.7
0.29
1
52
41.5
Minor 5ss
33.8
-1.8
3.1
40.2
41.3
Minor BPS
42.8
-0.4
2.2
57.88
44.2

Associated Gene:

Gene:
TMEM161B
Ensembl Gene ID:
ENSAPLG00000010679
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047617
81742628 - 81769811
27184