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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_81769154_81778412_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
81769154 - 81778412
Intron Length:
9259

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGGGTTGC
5'SS Class:
major
3'SS Sequence:
TCTGCTCTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTGAA
U12 Branch Point Sequence:
GTCTTGTGAAGG
Flanking Amino Acid:
LFRGLLSFLTCSSSAWQ*
Intron Amino Acid Position:
451

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
61.9
39.6
Major BPS
72.1
0.55
1.2
63.4
44.3
Major PPT
77.8
0.63
0.8
69.7
36.7
Minor 5ss
33.8
-1.8
3.1
40.2
41.3
Minor BPS
41.8
-0.7
2.3
47.98
45.4

Associated Gene:

Gene:
TMEM161B
Ensembl Gene ID:
ENSAPLG00000010679
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042044
81742628 - 81778434
35807