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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_81769154_81785099_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
81769154 - 81785099
Intron Length:
15946

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGGGTTGC
5'SS Class:
major
3'SS Sequence:
TTTTTTTCCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTCATGCCAACA
Flanking Amino Acid:
LFRGLLSFLTWRGCYSWPRY
Intron Amino Acid Position:
451

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
61.9
39.6
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
91.5
0.93
0.6
88.6
20.8
Minor 5ss
33.8
-1.8
3.1
40.2
41.3
Minor BPS
40.8
-0.7
2.3
56.51
42.6

Associated Gene:

Gene:
TMEM161B
Ensembl Gene ID:
ENSAPLG00000010679
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038251
81742628 - 81785329
42702