Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_81769154_81788189_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

81769154 - 81788189

Intron Length:

19036

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTGGGTTGC

5'SS Class:

major

3'SS Sequence:

TTGCCTTTTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAGTGAA

U12 Branch Point Sequence:

TGTTAGTGAATC

Flanking Amino Acid:

LFRGLLSFLTWCHHGITAGH

Intron Amino Acid Position:

451

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.54

61.9

39.6

Major BPS

64.3

0.35

1.2

55.4

Major PPT

0.72

0.8

Minor 5ss

33.8

-1.8

3.1

40.2

41.3

Minor BPS

47.5

-0.2

2.3

65.19

40.2

Associated Gene:

Gene:

TMEM161B

Ensembl Gene ID:

ENSAPLG00000010679

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048045

81742628 - 81791111

48484

ENSAPLT00000018860

81742628 - 81789917

47290