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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_82023903_82025876_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
82023903 - 82025876
Intron Length:
1974

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGTCTTT
5'SS Class:
major
3'SS Sequence:
TTTCTCCTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TATTCTTTCATT
Flanking Amino Acid:
SASRAGINMESYLSESLMLK
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
71.6
40.9
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
89.8
0.9
0.6
84.3
23.7
Minor 5ss
48.5
-0.1
3.2
73.2
43.6
Minor BPS
68.6
0.67
1.7
84.68
36.4

Associated Gene:

Gene:
CCNH
Ensembl Gene ID:
ENSAPLG00000005729
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005938
82018997 - 82031828
12832