About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_82025948_82027665_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82025948 - 82027665
Intron Length:
1718

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
GTTGCCACTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATTAC
U12 Branch Point Sequence:
TTTGCTTAGAGC
Flanking Amino Acid:
FLGKLLDGMKCMKNLIKKYE
Intron Amino Acid Position:
254

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
85.3
25.4
Major BPS
58.2
0.21
1
49.8
34.7
Major PPT
67.2
0.39
0.9
60
36.6
Minor 5ss
37.5
-1.4
2.8
46.9
41.8
Minor BPS
47.8
-0.1
2.1
64.69
42.1

Associated Gene:

Gene:
CCNH
Ensembl Gene ID:
ENSAPLG00000005729
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005938
82018997 - 82031828
12832