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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_82027778_82028080_F

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
82027778 - 82028080
Intron Length:
303

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
GGACGGTGGTTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
TTTTTCTGGACG
Flanking Amino Acid:
HSPEFSLNSNMKKRKGCEDD
Intron Amino Acid Position:
291

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1
80.1
34.8
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
46.8
-0.1
1.1
38.8
44.4
Minor 5ss
37.5
-1.4
2.8
47
41.7
Minor BPS
67.8
0.42
1.5
75.01
36.9

Associated Gene:

Gene:
CCNH
Ensembl Gene ID:
ENSAPLG00000005729
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005938
82018997 - 82031828
12832