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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_82046968_82047163_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82046968 - 82047163
Intron Length:
196

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATAAAAT
5'SS Class:
major
3'SS Sequence:
GTTTTTCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
AAACTTCTAACA
Flanking Amino Acid:
PEEEYSEFKELILQKELHVV
Intron Amino Acid Position:
674

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
75.8
33.1
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
89.1
0.88
0.7
81.2
36.5
Minor 5ss
40.6
-1.1
3
57.1
47.2
Minor BPS
49
-0
1.6
57.98
34.5

Associated Gene:

Gene:
RASA1
Ensembl Gene ID:
ENSAPLG00000005627
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005866
82034604 - 82092371
57768