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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_82047337_82051241_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82047337 - 82051241
Intron Length:
3905

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCCTTAAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTTAA
U12 Branch Point Sequence:
GATAACTTAACT
Flanking Amino Acid:
KTKKSKDPDILFMRCQLSRL
Intron Amino Acid Position:
616

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
92.9
22.2
Major BPS
65.6
0.39
0.9
55.7
32.1
Major PPT
82.8
0.74
0.9
88
22.6
Minor 5ss
44.1
-0.6
2.9
65.1
39.1
Minor BPS
68.4
0.66
1.6
80.59
40.1

Associated Gene:

Gene:
RASA1
Ensembl Gene ID:
ENSAPLG00000005627
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005866
82034604 - 82092371
57768