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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_82053537_82055765_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82053537 - 82055765
Intron Length:
2229

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
CCTTCTCTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
GTTTCATTACAC
Flanking Amino Acid:
FAGETPEQAQDWMKALQMFC
Intron Amino Acid Position:
512

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
77.7
30.1
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
78
0.63
0.7
76.7
25.3
Minor 5ss
27.6
-2.6
3.3
39.2
46.2
Minor BPS
53.5
0.09
2
69.99
40.7

Associated Gene:

Gene:
RASA1
Ensembl Gene ID:
ENSAPLG00000005627
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005866
82034604 - 82092371
57768