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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_82055854_82058454_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
82055854 - 82058454
Intron Length:
2601

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGATGC
5'SS Class:
strong_major
3'SS Sequence:
GTTTATCTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TTTTGTTTATCT
Flanking Amino Acid:
VYGVHDSLFGRPNCFQIVVQ
Intron Amino Acid Position:
482

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
66.9
40
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
73.2
0.52
1.1
76.2
37.9
Minor 5ss
36.9
-1.5
3.3
50.4
46.2
Minor BPS
64.5
0.53
2
87.39
38.7

Associated Gene:

Gene:
RASA1
Ensembl Gene ID:
ENSAPLG00000005627
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005866
82034604 - 82092371
57768