About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_82069615_82070604_R


Intron Information:

Intron Rank:
5

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
82069615 - 82070604

Intron Length:
990

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
GTG|GTAAGTAAT

5'SS Class:
strong_major

3'SS Sequence:
ATTTTCTCATTAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTTTCAT

U12 Branch Point Sequence:
ATGCACTTAATA

Flanking Amino Acid:
LIVEDLVEEVGREEDPHEGK

Intron Amino Acid Position:
285

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
91
0.97
0.8
88.8
25

Major BPS
100
1.24
0.5
100
0

Major PPT
75.9
0.58
0.9
76
33.2

Minor 5ss
37.5
-1.4
2.8
48.3
41.8

Minor BPS
62.6
0.39
1.5
68.49
37.7

Associated Gene:

Gene:
RASA1

Ensembl Gene ID:

Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

82034604 - 82092371
57768