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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_82074443_82078198_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
82074443 - 82078198
Intron Length:
3756

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTATTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTAACA
Flanking Amino Acid:
FLSKTNVNHFRIIAMCGDYY
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.7
89.7
22.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.1
0.79
0.9
81.9
33.5
Minor 5ss
34
-1.8
3.2
48.5
47.2
Minor BPS
78.3
0.88
1.4
88.34
28.1

Associated Gene:

Gene:
RASA1
Ensembl Gene ID:
ENSAPLG00000005627
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005866
82034604 - 82092371
57768