About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_82228766_82229239_R

Intron Information:

Intron Rank:
130153
Intron Class:
major
Intron Phase:
Intron Coordinates:
82228766 - 82229239
Intron Length:
474

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAATGAA
5'SS Class:
major
3'SS Sequence:
TCTTTTTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGGATTTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1.2
72.1
32.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
86.9
0.83
0.7
80.6
31.5
Minor 5ss
27.7
-2.6
3
32.1
42.4
Minor BPS
53.1
0.18
1.6
68.62
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017225
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024895
82226045 - 82229999
3955