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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_82280155_82281067_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82280155 - 82281067
Intron Length:
913

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCGTGA
5'SS Class:
major
3'SS Sequence:
TTTTCTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
CTAACATTCATT
Flanking Amino Acid:
RSHYEDGPGKNLPFSVDNKW
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66
0.38
1.2
57.7
43.9
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
90.8
0.92
0.6
85.1
29.7
Minor 5ss
40.6
-1.1
3.4
56.3
47.8
Minor BPS
47.5
-0.1
2
66.64
44

Associated Gene:

Gene:
COX7C
Ensembl Gene ID:
ENSAPLG00000024728
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039768
82278861 - 82281532
2672