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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_82515566_82515694_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82515566 - 82515694
Intron Length:
129

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATACT
5'SS Class:
strong_major
3'SS Sequence:
CCCTCTGTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTCAA
U12 Branch Point Sequence:
TCAAGCATGAGG
Flanking Amino Acid:
RVVRGSPTMEVREVTCPADE
Intron Amino Acid Position:
781

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
86.8
27.8
Major BPS
59
0.23
1.1
61.4
36.2
Major PPT
76.5
0.6
0.9
67.7
37.7
Minor 5ss
37.7
-1.4
2.9
52.3
44.3
Minor BPS
38.2
-1
2.2
40.73
43.5

Associated Gene:

Gene:
FRMPD1
Ensembl Gene ID:
ENSAPLG00000014290
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014888
82507762 - 82517281
9520