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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_82520770_82521073_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
82520770 - 82521073
Intron Length:
304

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTAGT
5'SS Class:
strong_major
3'SS Sequence:
GTTCCCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTGCAC
U12 Branch Point Sequence:
CGTTGGGTACCT
Flanking Amino Acid:
LEAWWMKVFTRS*
Intron Amino Acid Position:
292

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
77.8
38.7
Major BPS
50
-0
1.5
63.1
44.5
Major PPT
80.4
0.68
0.8
73.5
31.4
Minor 5ss
30.6
-2.2
3
42
44.7
Minor BPS
36.6
-0.9
2.8
59.57
49.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014388
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014986
82520646 - 82523246
2601