About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_82521308_82521968_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82521308 - 82521968
Intron Length:
661

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
ACGCTGCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CCCCTTTTCACG
Flanking Amino Acid:
IVYLTPDSENGSGRHFCLRS
Intron Amino Acid Position:
242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
86
29.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
66.5
0.37
1
58.4
37.8
Minor 5ss
41.2
-1
3
56.7
42
Minor BPS
44.9
-0.5
1.8
42.89
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014388
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014986
82520646 - 82523246
2601