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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_82522048_82522601_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82522048 - 82522601
Intron Length:
554

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGGGTT
5'SS Class:
strong_major
3'SS Sequence:
TTGCATTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACTAAT
U12 Branch Point Sequence:
CTTCTCCTACTG
Flanking Amino Acid:
RMNDGFSNYLMDTTQESYLD
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
78.7
35.3
Major BPS
69
0.47
1.2
69.9
35.3
Major PPT
83.2
0.75
0.9
80.8
36.5
Minor 5ss
35.3
-1.7
3.8
52.2
46
Minor BPS
45.2
-0.5
1.9
52.59
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014388
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014986
82520646 - 82523246
2601