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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_82530726_82535833_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
82530726 - 82535833
Intron Length:
5108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTCAG
5'SS Class:
major
3'SS Sequence:
CTTGAATTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAA
U12 Branch Point Sequence:
TTTTCTTGAATT
Flanking Amino Acid:
EAHEDCVNNIRFLDNRLFAT
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.5
1.2
60.9
45.3
Major BPS
74.6
0.61
1
65.6
41.4
Major PPT
77.9
0.63
0.9
73.7
40.5
Minor 5ss
28.5
-2.5
2.9
32.1
42.4
Minor BPS
78.8
0.98
1.2
92.73
29.2

Associated Gene:

Gene:
DCAF10
Ensembl Gene ID:
ENSAPLG00000010217
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010646
82529458 - 82541296
11839