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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_82536599_82537298_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82536599 - 82537298
Intron Length:
700

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGCT
5'SS Class:
strong_major
3'SS Sequence:
TTGCTGTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
CTGTGTTTAGTT
Flanking Amino Acid:
LRARRTTSSSEMTSSSSSAP
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
81.2
30.6
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
82.1
0.72
0.9
76.5
37.5
Minor 5ss
34.7
-1.7
3.3
50.4
46
Minor BPS
48.8
-0
2
66.76
45.1

Associated Gene:

Gene:
DCAF10
Ensembl Gene ID:
ENSAPLG00000010217
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010646
82529458 - 82541296
11839