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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_82538602_82540927_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82538602 - 82540927
Intron Length:
2326

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACACAA
5'SS Class:
major
3'SS Sequence:
ACTCTCCCTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAG
U12 Branch Point Sequence:
CTTTCTCTGACT
Flanking Amino Acid:
RCSSNTDDQEWTCVYEFQEG
Intron Amino Acid Position:
267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.2
67.8
39.3
Major BPS
71
0.52
1.5
79.6
35.6
Major PPT
74
0.54
0.8
70.8
29.6
Minor 5ss
36.8
-1.5
3.1
47.7
47.7
Minor BPS
65.9
0.58
1.7
83.72
37.5

Associated Gene:

Gene:
DCAF10
Ensembl Gene ID:
ENSAPLG00000010217
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010646
82529458 - 82541296
11839