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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_82558920_82560511_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

82558920 - 82560511

Intron Length:

1592

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGAAC

5'SS Class:

strong_major

3'SS Sequence:

TCTTGCCCTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTCAT

U12 Branch Point Sequence:

CACTCCGTATTT

Flanking Amino Acid:

NFTSLTYNNGSVQNLISASM

Intron Amino Acid Position:

409

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.1

0.97

0.8

82.1

Major BPS

91.2

1.02

0.7

91.7

20.2

Major PPT

81.4

0.71

0.8

77.8

31.1

Minor 5ss

32.6

-2

3.1

42.1

Minor BPS

-0.1

2.2

64.27

46.6

Associated Gene:

Gene:

POLR1E

Ensembl Gene ID:

ENSAPLG00000010340

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010769

82550614 - 82574042

23429