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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_82561912_82562721_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
82561912 - 82562721
Intron Length:
810

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATACTG
5'SS Class:
major
3'SS Sequence:
CTTTCCTCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TGGTCCTCATGC
Flanking Amino Acid:
EEVTKKTEEKSHCSFVLEEL
Intron Amino Acid Position:
337

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
68.3
42.6
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
87.3
0.84
0.6
85
22.5
Minor 5ss
35.6
-1.6
3.2
48
47.5
Minor BPS
47.1
-0.2
2.1
59.28
45.5

Associated Gene:

Gene:
POLR1E
Ensembl Gene ID:
ENSAPLG00000010340
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010769
82550614 - 82574042
23429