Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_82566444_82566833_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

82566444 - 82566833

Intron Length:

390

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGGTTG

5'SS Class:

strong_major

3'SS Sequence:

TTCTCATGCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTCAT

U12 Branch Point Sequence:

TTCTCATGCACA

Flanking Amino Acid:

DYQNKSFREKVDLCIEAFGT

Intron Amino Acid Position:

221

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.4

0.95

0.8

79.5

36.8

Major BPS

94.9

1.12

0.6

93.9

14.7

Major PPT

73.4

0.53

0.9

68.4

36.4

Minor 5ss

40.3

-1.1

3.3

49.2

Minor BPS

49.1

-0

2.2

69.44

42.6

Associated Gene:

Gene:

POLR1E

Ensembl Gene ID:

ENSAPLG00000010340

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010769

82550614 - 82574042

23429