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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_82566890_82567629_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82566890 - 82567629
Intron Length:
740

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAAGA
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TGTTCTTTTATA
Flanking Amino Acid:
EIFNMQPLLSDNVIPDDTKD
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
71.7
40.1
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
84.9
0.79
0.7
80.3
31.8
Minor 5ss
31.4
-2.1
3.1
40.2
45.5
Minor BPS
67
0.53
1.6
75.65
35.5

Associated Gene:

Gene:
POLR1E
Ensembl Gene ID:
ENSAPLG00000010340
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010769
82550614 - 82574042
23429