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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_82567716_82573221_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
82567716 - 82573221
Intron Length:
5506

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGGAA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTGCTAATAATT
Flanking Amino Acid:
SGAGRGSALCRYFVGVLNKD
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71
34.5
Major BPS
80
0.75
1
78.6
31
Major PPT
85.4
0.8
0.8
77.8
36.7
Minor 5ss
34.6
-1.7
3.5
45.7
49.5
Minor BPS
49.1
0.01
1.8
71.27
39.6

Associated Gene:

Gene:
POLR1E
Ensembl Gene ID:
ENSAPLG00000010340
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010769
82550614 - 82574042
23429