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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_82590249_82592121_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82590249 - 82592121
Intron Length:
1873

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCCATGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATCAC
U12 Branch Point Sequence:
AATCACTCAGTA
Flanking Amino Acid:
DHPLLSLKNCVILPHVGSAT
Intron Amino Acid Position:
291

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
73.5
38.6
Major BPS
61.7
0.29
1
63.7
32.3
Major PPT
76
0.59
0.9
70.2
35.4
Minor 5ss
41
-1
2.8
53.5
43.7
Minor BPS
44.6
-0.4
1.8
54.49
37.5

Associated Gene:

Gene:
GRHPR
Ensembl Gene ID:
ENSAPLG00000010737
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011171
82590127 - 82596055
5929